Software Map

Please note: we have decided to move the repositories over to github. Please see https://github.com/apes-suite.

APES is a simulation suite for highly resolved physical simulations (mainly fluid dynamics) on massively parallel computing systems. It is based on octree meshes and their partitioning with a space-filling curve for distributed execution with the Message Passing Interface (MPI).

The suite covers all necessary tools from mesh generation (seeder) to post-processing (harvesting) and includes a Discontinuous Galerkin (ateles) and a Lattice-Boltzmann (musubi) solver within in this infrastructure. APES is available as open-source but there are various open-source licenses involved for different parts of the code. A large fraction is released under the terms of the ISC license.

The APES solvers have shown good scalability on hundreds of thousands of cores and runs on a wide range of different architectures from IBMs BlueGene to NEC SX vector systems.

The core library treelm is released under the two-clause BSD-license. The Aotus library, which is used for the user interface of the tools in the APES suite is released under the terms of the MIT license, and third party code included for convenience includes: GPL for coco, which is small program used for preprocessing the Fortran source code, BSD for waf that is used as a build tool, a modified BSD for extractions of LAPACK code, a custom license by Reiji Suda for FXTPACK, which states the following:

Anyone can use FXTPACK in any software, and anyone can modify the
source files.

When you publish your software that uses FXTPACK or its modification,
please mention that FXTPACK developed by Reiji Suda is used, in the
documentation.

When you publish your paper of your research that uses FXTPACK,
please refer the paper [R. Suda, M. Takami, "A Fast Spherical Harmonics
Transform Algorithm", Math. Comp., 71-238, Apr. 2002, pp.703--715]
(and [R. SUda, "Fast Spherical Harmonic Transform Algorithm based on·
Generalized Fast Multiple Method", RIMS Kokyuroku vol 1606,
pp. 18-29, Jun. 2008, RIMS, Kyoto University]).

FXTPACK is only used as an optional feature in polynomial handling for the discontinuous Galerkin solver, another alternative is offered by the FFTW, but that library is not included in the source distribution.

Receding Horizon controller Generator in Maxima

Code generator for receding horizon control with C/GMRES. This software based on AutoGenU which has been developed on Mathematica by T.Ohtsuka. This project provides also template engine for Maxima.

GNU Health is a Libre Digital Health ecosystem that provides the tools for individuals, health professionals, institutions and governments to proactively assess and improve the underlying determinants of health, from the socioeconomic agents to the molecular basis of disease. From primary health care to precision medicine.

GNU Health is a Libre, community driven project from GNU Solidario, a non-profit humanitarian organization focused on Social Medicine. Our project has been adopted by multilateral organizations to national public health systems around the world.


The following are the main components that make up the GNU Health ecosystem:

* Hospital Information System: Its modular design allows to be deployed in many different scenarios: from small private offices, to large, national public health systems. It covers the functionality of Electronic Medical Record (EMR), Hospital Management and Health Information System (HIS).

GNU Health HIS component is standard-based, and it provides over 40 packages/modules (primary care, obstetrics & gynecology, pediatrics, surgery, lims, genetics, diagnostic imaging, reporting...) to fit your institution needs. The GH HMIS combines the socioeconomic determinants of health with state-of-the-art technology in bioinformatics and clinical genetics. It manages the internal processes of a health institution, such as financial management, billing, stock management, pharmacies or labs (LIMS)

* Laboratory (LIMS): GNU LIMS, also known as Occhiolino, is a modern Laboratory Information Management System for the healthcare and biomedical sectors, that has emerged as a GNU Health sub-project.

The Laboratory Modules manage the request, creation and evaluation of laboratory analyses. As far as the LIMS (Laboratory Information Management System) functionality, GNU Health is very flexible. You will be able to link it to the patient chart and to the financial management of the Health Center

* Personal Health Record: MyGNUHealth is the upcoming GH's Personal Health Record application that integrates to the GNU Health Federation, focused on desktop and and mobile devices.

MyGNUHealth development uses the latest mobile and desktop technology, such as Qt, KDE Plasma and the Kirigami framework. MyGNUHealth Personal Health Record is a privacy-oriented PHR, that will put the citizen and the patient in control of her health and medical information. MyGNUHealth will boost and improve the interaction between citizens and the health professionals, with up-to-date information on demographics and medical information.

* The GNU Health Federation: The GNU Health Federation allows to build large, nation wide federated networks with thousands of heterogeneous nodes. The GNU Health federation is revolutionary, and will provide the community, the health practitioners, the research institutions and the ministries of health to have much better perspective and precise information on the individuals and their context.

The GNU Health Federation project aims to build a community based, federated health network among different regions and in a country, and, why not, among countries around the globe. A federation can be as large as you want. From a small regional federated network with several nodes, to a large, nationwide health network with thousands / millions of participating nodes.

* GNU Health Embedded: Single-board Computers (SBC) are devices with a huge potential for the Public Health System when partnering with GNU Health. They can provide real-time monitoring of vital signs in hospital settings, retrieve information from laboratory instruments or be a great Personal Health tracker. They are also a great resource for research and academic institutions.

* Social Medicine: Single-board Computers (SBC) are devices with a huge potential for the Public Health System when partnering with GNU Health. They can provide real-time monitoring of vital signs in hospital settings, retrieve information from laboratory instruments or be a great Personal Health tracker. They are also a great resource for research and academic institutions.

オープンソースのLMS，Moodleの日本語環境への対応を行った互換性の高いMoodleパッケージです．2007年2月より開発を開始し，Moodle1.8, Moodle1.9を日本語版Windows(Server含む)上で動作可能としました．現在，Moodle2.2をターゲットにMoodle2のfs_moodle化を進めています．